=> Building biology/azara Started : Monday, 5 DEC 2016 at 15:35:56 UTC Platform: 4.7-DEVELOPMENT DragonFly v4.7.0.862.g082b4-DEVELOPMENT #115: Mon Nov 21 09:25:41 PST 2016 marino@muscles.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=4.7 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 4.7 UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/sbin:/usr/pkg/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- This package does not use the options framework. -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- FREETYPE_CONFIG=/bin/freetype-config INSTALL_INFO= MAKEINFO=/construction/biology/azara/work/.tools/bin/makeinfo FLEX= BISON= PKG_CONFIG= PKG_CONFIG_LIBDIR=/construction/biology/azara/work/.buildlink/lib/pkgconfig:/construction/biology/azara/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/construction/biology/azara/work/.pkg-config.log PKG_CONFIG_PATH= MAKE=make PTHREAD_CFLAGS= -pthread PTHREAD_LDFLAGS= -pthread PTHREAD_LIBS=-lpthread -lrt PTHREADBASE=/usr CWRAPPERS_CONFIG_DIR=/construction/biology/azara/work/.cwrapper/config CC=cc CFLAGS=-O2 CPPFLAGS=-I/include CXX=c++ CXXFLAGS=-O2 COMPILER_RPATH_FLAG=-Wl,-R F77=f77 FC=f77 FFLAGS=-O LANG=C LC_ALL=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-L/lib -Wl,-R/lib LINKER_RPATH_FLAG=-R PATH=/construction/biology/azara/work/.cwrapper/bin:/construction/biology/azara/work/.buildlink/bin:/construction/biology/azara/work/.gcc/bin:/construction/biology/azara/work/.tools/bin:/usr/pkg/bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/sbin:/usr/pkg/bin:/usr/pkg/bin:/usr/pkg/bin PREFIX=/usr/pkg MAKELEVEL=0 CONFIG_SITE= PKG_SYSCONFDIR=/usr/pkg/etc CXXCPP=cpp HOME=/construction/biology/azara/work/.home CWRAPPERS_CONFIG_DIR=/construction/biology/azara/work/.cwrapper/config -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- USETOOLS=no MOTIFLIB=-Wl,-R/lib -L/lib -lXm -lXft MOTIFBASE= CC=cc CFLAGS=-O2 CPPFLAGS=-I/include CXX=c++ CXXFLAGS=-O2 COMPILER_RPATH_FLAG=-Wl,-R F77=f77 FC=f77 FFLAGS=-O LANG=C LC_ALL=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-L/lib -Wl,-R/lib LINKER_RPATH_FLAG=-R PATH=/construction/biology/azara/work/.cwrapper/bin:/construction/biology/azara/work/.buildlink/bin:/construction/biology/azara/work/.gcc/bin:/construction/biology/azara/work/.tools/bin:/usr/pkg/bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/pkg/sbin:/usr/pkg/bin:/usr/pkg/bin:/usr/pkg/bin PREFIX=/usr/pkg MAKELEVEL=0 CONFIG_SITE= PKG_SYSCONFDIR=/usr/pkg/etc CXXCPP=cpp HOME=/construction/biology/azara/work/.home CWRAPPERS_CONFIG_DIR=/construction/biology/azara/work/.cwrapper/config CPP=cpp LINK_ALL_LIBGCC_HACK= LOCALBASE=/usr/pkg X11BASE=/usr/pkg PKGMANDIR=man PKGINFODIR=info PKGGNUDIR=gnu/ MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/usr/bin/install -c -s -o root -g wheel -m 755 BSD_INSTALL_SCRIPT=/usr/bin/install -c -o root -g wheel -m 755 BSD_INSTALL_LIB=/usr/bin/install -c -o root -g wheel -m 755 BSD_INSTALL_DATA=/usr/bin/install -c -o root -g wheel -m 644 BSD_INSTALL_MAN=/usr/bin/install -c -o root -g wheel -m 644 BSD_INSTALL=/usr/bin/install BSD_INSTALL_PROGRAM_DIR=/usr/bin/install -d -o root -g wheel -m 755 BSD_INSTALL_SCRIPT_DIR=/usr/bin/install -d -o root -g wheel -m 755 BSD_INSTALL_LIB_DIR=/usr/bin/install -d -o root -g wheel -m 755 BSD_INSTALL_DATA_DIR=/usr/bin/install -d -o root -g wheel -m 755 BSD_INSTALL_MAN_DIR=/usr/bin/install -d -o root -g wheel -m 755 BSD_INSTALL_GAME=/usr/bin/install -c -s -o root -g wheel -m 2555 BSD_INSTALL_GAME_DATA=/usr/bin/install -c -o root -g wheel -m 664 BSD_INSTALL_GAME_DIR=/usr/bin/install -d -o root -g wheel -m 775 INSTALL_INFO= MAKEINFO=/construction/biology/azara/work/.tools/bin/makeinfo FLEX= BISON= PKG_CONFIG= PKG_CONFIG_LIBDIR=/construction/biology/azara/work/.buildlink/lib/pkgconfig:/construction/biology/azara/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/construction/biology/azara/work/.pkg-config.log PKG_CONFIG_PATH= PTHREAD_CFLAGS= -pthread PTHREAD_LDFLAGS= -pthread PTHREAD_LIBS=-lpthread -lrt PTHREADBASE=/usr CWRAPPERS_CONFIG_DIR=/construction/biology/azara/work/.cwrapper/config -------------------------------------------------- -- MAKE_FLAGS -------------------------------------------------- -------------------------------------------------- -- BUILD_MAKE_FLAGS -------------------------------------------------- -------------------------------------------------- -- PLIST_SUBST -------------------------------------------------- OPSYS=DragonFly OS_VERSION=4.7 MACHINE_ARCH=x86_64 MACHINE_GNU_ARCH=x86_64 MACHINE_GNU_PLATFORM=x86_64-pc-dragonfly LN=/bin/ln LOWER_VENDOR=pc LOWER_OPSYS=dragonfly LOWER_OS_VERSION=4.7 PKGBASE=azara PKGNAME=azara-2.7 PKGLOCALEDIR=share PKGVERSION=2.7 LOCALBASE=/usr/pkg VIEWBASE= X11BASE=/usr/pkg CHGRP=/usr/bin/chgrp CHMOD=/bin/chmod CHOWN=/usr/sbin/chown MKDIR=/bin/mkdir -p RMDIR=/bin/rmdir RM=/bin/rm TRUE=/usr/bin/true PKGGNUDIR=gnu/ PKGMANDIR=man -------------------------------------------------- -- FILES_SUBST -------------------------------------------------- PREFIX=/usr/pkg LOCALBASE=/usr/pkg X11BASE=/usr/pkg VARBASE=/var PKG_SYSCONFBASE=/usr/pkg/etc PKG_SYSCONFBASEDIR=/usr/pkg/etc PKG_SYSCONFDIR=/usr/pkg/etc CONF_DEPENDS= PKGBASE=azara -------------------------------------------------- -- /etc/mk.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes ALLOW_VULNERABLE_PACKAGES=yes PKG_CREATE_VERBOSE=yes PKG_FORMAT=pkgng PKGSRCDIR=/xports DISTDIR=/distfiles WRKOBJDIR=/construction PACKAGES=/packages MAKE_JOBS=5 SKIP_LICENSE_CHECK=yes PKG_UID.courier= 5001 PKG_GID.majordom= 5002 PKG_UID.majordom= 5002 PKG_GID.qmail= 5003 PKG_UID.qmailq= 5003 PKG_UID.qmailr= 5004 PKG_UID.qmails= 5005 PKG_GID.nofiles= 5006 PKG_UID.alias= 5006 PKG_UID.qmaild= 5007 PKG_UID.qmaill= 5008 PKG_UID.qmailp= 5009 PKG_DEFAULT_OPTIONS+= -pulseaudio OS_VERSION= 4.7 HOST_MACHINE_ARCH= x86_64 OPSYS= DragonFly LOWER_OPSYS= dragonfly MAKEFLAGS= OPSYS=DragonFly MAKEFLAGS+= OS_VERSION=4.7 MAKEFLAGS+= HOST_MACHINE_ARCH=x86_64 MAKEFLAGS+= _PKGSRCDIR=/xports -------------------------------------------------------------------------------- -- Phase: bootstrap-depends -------------------------------------------------------------------------------- => Bootstrap dependency digest>=20010302 not installed, but package found. Installing digest-20160304... Extracting digest-20160304: .. done -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- => Bootstrap dependency digest>=20010302: found digest-20160304 -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- => Bootstrap dependency digest>=20010302: found digest-20160304 => Checksum SHA1 OK for azara-2.7-src.tar.gz => Checksum RMD160 OK for azara-2.7-src.tar.gz => Checksum SHA512 OK for azara-2.7-src.tar.gz -------------------------------------------------------------------------------- -- Phase: depends -------------------------------------------------------------------------------- => Bootstrap dependency digest>=20010302: found digest-20160304 ===> Installing dependencies for azara-2.7nb6 ========================================================================== The following variables will affect the build process of this package, azara-2.7nb6. Their current value is shown below: * JPEG_DEFAULT = jpeg * MOTIFBASE (defined) * MOTIF_TYPE = motif Based on these variables, the following variables have been set: * JPEGBASE (defined, but empty) * JPEG_TYPE = jpeg You may want to abort the process now with CTRL-C and change their value before continuing. Be sure to run `/usr/pkg/bin/bmake clean' after the changes. ========================================================================== => Build dependency dri2proto>=2.1 not installed, but package found. Installing dri2proto-2.8... Extracting dri2proto-2.8: .... done => Build dependency dri3proto>=1.0 not installed, but package found. Installing dri3proto-1.0... Extracting dri3proto-1.0: ... done => Build dependency xproto>=7.0.13 not installed, but package found. Installing xproto-7.0.31... Extracting xproto-7.0.31: .......... done => Build dependency presentproto>=1.0 not installed, but package found. Installing presentproto-1.0... Extracting presentproto-1.0: .... done => Build dependency glproto>=1.4.11 not installed, but package found. Installing glproto-1.4.17... Extracting glproto-1.4.17: ...... done => Build dependency damageproto>=1.1.0 not installed, but package found. Installing damageproto-1.2.1... Extracting damageproto-1.2.1: .... done => Build dependency fixesproto>=4.0.0 not installed, but package found. Installing fixesproto-5.0... Extracting fixesproto-5.0: .... done => Build dependency xextproto>=7.0.99.1 not installed, but package found. Installing xextproto-7.3.0... Extracting xextproto-7.3.0: .......... done => Build dependency inputproto>=2.3 not installed, but package found. Installing inputproto-2.3.2... Extracting inputproto-2.3.2: ..... done => Build dependency kbproto>=1.0.2 not installed, but package found. Installing kbproto-1.0.7... Extracting kbproto-1.0.7: .......... done => Build dependency xcb-proto>=1.4 not installed, but package found. Installing xcb-proto-1.12... Extracting xcb-proto-1.12: .......... done => Build dependency xf86vidmodeproto>=2.3 not installed, but package found. Installing xf86vidmodeproto-2.3.1... Extracting xf86vidmodeproto-2.3.1: .... done => Build dependency xf86driproto>=2.0.3 not installed, but package found. Installing xf86driproto-2.1.1nb1... Extracting xf86driproto-2.1.1nb1: .... done => Build dependency renderproto>=0.9.3nb1 not installed, but package found. Installing renderproto-0.11.1... Extracting renderproto-0.11.1: .... done => Build dependency xbitmaps>=1.0 not installed, but package found. Installing xbitmaps-1.1.1... Extracting xbitmaps-1.1.1: .......... done => Build dependency cwrappers>=20150314 not installed, but package found. Installing cwrappers-20161125... Extracting cwrappers-20161125: ......... done => Full dependency glu>=7.11.2 not installed, but package found. Installing glu-9.0.0nb2... `-- Installing MesaLib-11.2.2... | `-- Installing expat-2.2.0... | `-- Extracting expat-2.2.0: .......... done | `-- Installing libX11-1.6.4... | | `-- Installing libXau-1.0.8... | | `-- Extracting libXau-1.0.8: .......... done | | `-- Installing libXdmcp-1.1.2... | | `-- Extracting libXdmcp-1.1.2: ........ done | | `-- Installing libxcb-1.12... | | `-- Extracting libxcb-1.12: .......... done | `-- Extracting libX11-1.6.4: .......... done | `-- Installing libXdamage-1.1.4... | | `-- Installing libXfixes-5.0.3... | | `-- Extracting libXfixes-5.0.3: ........ done | `-- Extracting libXdamage-1.1.4: ....... done | `-- Installing libXext-1.3.3... | `-- Extracting libXext-1.3.3: .......... done | `-- Installing libXxf86vm-1.1.4... | `-- Extracting libXxf86vm-1.1.4: .......... done | `-- Installing libdevq-0.0.2... | `-- Extracting libdevq-0.0.2: ....... done | `-- Installing libdrm-2.4.74... | | `-- Installing libatomic_ops-7.4.4... | | `-- Extracting libatomic_ops-7.4.4: .......... done | | `-- Installing libpciaccess-0.13.4nb1... | | `-- Installing pciids-20150907... | | `-- Extracting pciids-20150907: . done | | `-- Extracting libpciaccess-0.13.4nb1: ....... done | `-- Extracting libdrm-2.4.74: .......... done | `-- Installing libxshmfence-1.2nb5... | `-- Extracting libxshmfence-1.2nb5: ....... done `-- Extracting MesaLib-11.2.2: .......... done Extracting glu-9.0.0nb2: ........ done Message from libatomic_ops-7.4.4: =========================================================================== $NetBSD: MESSAGE,v 1.1 2011/10/04 18:15:29 bsiegert Exp $ There are two kinds of entities in: /usr/pkg/include/libatomic_ops/sysdeps - Subdirectories corresponding to specific compilers (or compiler/OS combinations). Each of these includes one or more architecture-specific headers. - More generic header files corresponding to a particular ordering and/or atomicity property that might be shared by multiple hardware platforms. =========================================================================== => Full dependency libX11>=1.5: found libX11-1.6.4 => Full dependency glut>=7.11.2 not installed, but package found. Installing glut-8.0.1nb2... `-- Installing libXi-1.7.8... `-- Extracting libXi-1.7.8: .......... done `-- Installing libXmu-1.1.2... | `-- Installing libXt-1.1.5... | | `-- Installing libICE-1.0.9... | | `-- Extracting libICE-1.0.9: .......... done | | `-- Installing libSM-1.2.2... | | `-- Extracting libSM-1.2.2: .......... done | `-- Extracting libXt-1.1.5: .......... done `-- Extracting libXmu-1.1.2: .......... done Extracting glut-8.0.1nb2: ....... done => Full dependency libXpm>=3.5.4.2 not installed, but package found. Installing libXpm-3.5.11... `-- Installing gettext-lib-0.19.8.1... `-- Extracting gettext-lib-0.19.8.1: ........ done Extracting libXpm-3.5.11: .......... done => Full dependency motif>=2.3.4nb6 not installed, but package found. Installing motif-2.3.4nb7... `-- Installing jpeg-9b... `-- Extracting jpeg-9b: .......... done `-- Installing libXaw-1.0.13... `-- Extracting libXaw-1.0.13: .......... done `-- Installing libXft-2.3.2... | `-- Installing fontconfig-2.12.1... | | `-- Installing freetype2-2.7nb1... | | `-- Extracting freetype2-2.7nb1: .......... done | `-- Extracting fontconfig-2.12.1: .......... done | `-- Installing libXrender-0.9.10... | `-- Extracting libXrender-0.9.10: ........ done `-- Extracting libXft-2.3.2: ......... done `-- Installing png-1.6.26... `-- Extracting png-1.6.26: .......... done Extracting motif-2.3.4nb7: .......... done -------------------------------------------------------------------------------- -- Phase: tools -------------------------------------------------------------------------------- => Bootstrap dependency digest>=20010302: found digest-20160304 => Checksum SHA1 OK for azara-2.7-src.tar.gz => Checksum RMD160 OK for azara-2.7-src.tar.gz => Checksum SHA512 OK for azara-2.7-src.tar.gz ===> Overriding tools for azara-2.7nb6 -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- => Bootstrap dependency digest>=20010302: found digest-20160304 => Checksum SHA1 OK for azara-2.7-src.tar.gz => Checksum RMD160 OK for azara-2.7-src.tar.gz => Checksum SHA512 OK for azara-2.7-src.tar.gz ===> Extracting for azara-2.7nb6 -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- => Bootstrap dependency digest>=20010302: found digest-20160304 ===> Patching for azara-2.7nb6 => Applying pkgsrc patches for azara-2.7nb6 -------------------------------------------------------------------------------- -- Phase: wrapper -------------------------------------------------------------------------------- => Bootstrap dependency digest>=20010302: found digest-20160304 ===> Creating toolchain wrappers for azara-2.7nb6 src=/usr/pkg/lib/pkgconfig/fixesproto.pc dst=/construction/biology/azara/work/.buildlink/lib/pkgconfig/fixesext.pc; /bin/mkdir -p /construction/biology/azara/work/.buildlink/lib/pkgconfig; if test -f ${src}; then /bin/ln -sf ${src} ${dst}; fi -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- => Bootstrap dependency digest>=20010302: found digest-20160304 ===> Configuring for azara-2.7nb6 -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- => Bootstrap dependency digest>=20010302: found digest-20160304 ===> Building for azara-2.7nb6 cd help; /usr/pkg/bin/bmake cc -c -O txt2html.c txt2html.c: In function 'next_ref_stopper': txt2html.c:80:13: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] if (isspace(*ptr) || ^ txt2html.c:81:34: warning: implicit declaration of function 'isalnum' [-Wimplicit-function-declaration] (is_punctuation_char(*ptr) && !isalnum(*(ptr+1)))) ^ cc -o txt2html txt2html.o cc -c -O txt2hlp.c cc -o txt2hlp txt2hlp.o ./txt2hlp azara ./txt2hlp combine ./txt2hlp components ./txt2hlp connect ./txt2hlp contours ./txt2hlp deflate ./txt2hlp extract ./txt2hlp peak_find ./txt2hlp peak_fit ./txt2hlp plot1 ./txt2hlp plot2 ./txt2hlp process ./txt2hlp project ./txt2hlp slides ./txt2hlp reflate ./txt2hlp unblock ./txt2hlp viewer ./txt2hlp plot2/baseline ./txt2hlp plot2/data ./txt2hlp plot2/extract ./txt2hlp plot2/levels ./txt2hlp plot2/object ./txt2hlp plot2/output ./txt2hlp plot2/peak ./txt2hlp plot2/peaks ./txt2hlp plot2/phase ./txt2hlp plot2/property ./txt2hlp plot2/region ./txt2hlp plot2/rowcol ./txt2hlp plot2/save ./txt2hlp plot2/tracking ./txt2hlp plot1/button ./txt2hlp plot1/data ./txt2hlp plot1/object ./txt2hlp plot1/output ./txt2hlp plot1/property ./txt2hlp plot1/region ./txt2hlp plot1/slider ./txt2hlp plot1/text ./txt2html azara ./txt2html combine ./txt2html components ./txt2html connect ./txt2html contours ./txt2html deflate ./txt2html extract ./txt2html peak_find ./txt2html peak_fit ./txt2html plot1 ./txt2html plot2 ./txt2html process ./txt2html project ./txt2html slides ./txt2html reflate ./txt2html unblock ./txt2html viewer ./txt2html plot2/baseline ./txt2html plot2/data ./txt2html plot2/extract ./txt2html plot2/levels ./txt2html plot2/object ./txt2html plot2/output ./txt2html plot2/peak ./txt2html plot2/peaks ./txt2html plot2/phase ./txt2html plot2/property ./txt2html plot2/region ./txt2html plot2/rowcol ./txt2html plot2/save ./txt2html plot2/tracking ./txt2html plot1/button ./txt2html plot1/data ./txt2html plot1/object ./txt2html plot1/output ./txt2html plot1/property ./txt2html plot1/region ./txt2html plot1/slider ./txt2html plot1/text ./txt2html CHANGES ./txt2html INSTALL ./txt2html README-2.7 ./txt2html CHANGES-1.0-1 ./txt2html CHANGES-1.0-2 ./txt2html CHANGES-1.0-3 ./txt2html CHANGES-2.0-0 ./txt2html CHANGES-2.5-0 ./txt2html CHANGES-2.6-0 ./txt2html CHANGES-2.7-0 ./txt2html LICENSE cd process; /usr/pkg/bin/bmake /usr/pkg/bin/bmake local_objects cc -c -O process.c cc -c -O block.c cc -c -O block2.c cc -c -O block3.c cc -c -O files.c cc -c -O script.c cc -c -O store.c cc -c -O arrange.c cc -c -O avance.c cc -c -O baseline.c cc -c -O command.c cc -c -O complex.c cc -c -O convolve.c cc -c -O fft.c cc -c -O lp_extend.c cc -c -O lp_first.c cc -c -O lp_fit.c cc -c -O lp_last.c cc -c -O maxent.c cc -c -O opus.c cc -c -O phase.c cc -c -O weight.c cd ../global; /usr/pkg/bin/bmake process_objects cc -c -O -o avance_param.o avance_param.c cc -c -O -o base.o base.c cc -c -O -o block_io.o block_io.c cc -c -O -o complex.o complex.c cc -c -O -o conv.o conv.c cc -c -O -o csvd.o csvd.c cc -c -O -o fblp.o fblp.c cc -c -O -o ft.o ft.c cc -c -O -o help.o help.c cc -c -O -o lin_pred.o lin_pred.c cc -c -O -o lp.o lp.c cc -c -O -o mem.o mem.c cc -c -O -o par.o par.c cc -c -O -o parse.o parse.c cc -c -O -o poly_roots.o poly_roots.c cc -c -O -o random.o random.c cc -c -O -o ref.o ref.c cc -c -O -o svd.o svd.c cc -c -O -o utility.o utility.c utility.c: In function 'empty_string': utility.c:108:7: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] if (!isspace(string[i])) ^ cc -c -O -o linpack/caxpy.o linpack/caxpy.c cc -c -O -o linpack/cdotc.o linpack/cdotc.c cc -c -O -o linpack/cscal.o linpack/cscal.c cc -c -O -o linpack/csrot.o linpack/csrot.c cc -c -O -o linpack/cswap.o linpack/cswap.c cc -c -O -o linpack/scnrm2.o linpack/scnrm2.c cc -c -O -o linpack/srotg.o linpack/srotg.c cc -c -O -o linpack/r_cnjg.o linpack/r_cnjg.c cc -c -O -o linpack/r_imag.o linpack/r_imag.c cc -c -O -o linpack/r_sign.o linpack/r_sign.c cc -c -O -o linpack/c_abs.o linpack/c_abs.c cc -c -O -o linpack/c_div.o linpack/c_div.c cc -c -O -o linpack/csvdc.o linpack/csvdc.c cc -o process process.o block.o block2.o block3.o files.o script.o store.o arrange.o avance.o baseline.o command.o complex.o convolve.o fft.o lp_extend.o lp_first.o lp_fit.o lp_last.o maxent.o opus.o phase.o weight.o ../global/avance_param.o ../global/base.o ../global/block_io.o ../global/complex.o ../global/conv.o ../global/csvd.o ../global/fblp.o ../global/ft.o ../global/help.o ../global/lin_pred.o ../global/lp.o ../global/mem.o ../global/par.o ../global/parse.o ../global/poly_roots.o ../global/random.o ../global/ref.o ../global/svd.o ../global/utility.o ../global/linpack/caxpy.o ../global/linpack/cdotc.o ../global/linpack/cscal.o ../global/linpack/csrot.o ../global/linpack/cswap.o ../global/linpack/scnrm2.o ../global/linpack/srotg.o ../global/linpack/r_cnjg.o ../global/linpack/r_imag.o ../global/linpack/r_sign.o ../global/linpack/c_abs.o ../global/linpack/c_div.o ../global/linpack/csvdc.o -lm cd peak; /usr/pkg/bin/bmake /usr/pkg/bin/bmake local_find_objects cc -c -O peak_find.c cc -c -O data.c cc -c -O find.c cc -c -O script_find.c cd ../global; /usr/pkg/bin/bmake peak_find_objects cc -c -O -o dbl_list.o dbl_list.c cc -c -O -o list.o list.c cc -c -O -o sorts.o sorts.c cc -o peak_find peak_find.o data.o find.o script_find.o ../global/block_io.o ../global/dbl_list.o ../global/help.o ../global/list.o ../global/par.o ../global/parse.o ../global/ref.o ../global/sorts.o ../global/utility.o -lm /usr/pkg/bin/bmake local_fit_objects cc -c -O peak_fit.c peak_fit.c: In function 'main': peak_fit.c:401:9: warning: implicit declaration of function 'initialize_fit' [-Wimplicit-function-declaration] if (initialize_fit(fit_param.nfitted, fit_param.nparams, npts_max, ^ cc -c -O fit.c cc -c -O fitter.c fitter.c: In function 'model_fit': fitter.c:402:5: warning: implicit declaration of function 'find_point' [-Wimplicit-function-declaration] find_point(nfitted, xx, point, cum_fitted_points, base_fitted, ^ cc -c -O group.c cc -c -O output.c cc -c -O script_fit.c cd ../global; /usr/pkg/bin/bmake peak_fit_objects cc -c -O -o gauss_jordan.o gauss_jordan.c cc -c -O -o nonlinear_model.o nonlinear_model.c cd ../process; /usr/pkg/bin/bmake peak /usr/pkg/bin/bmake peak_objects cc -o peak_fit peak_fit.o data.o fit.o fitter.o group.o output.o script_fit.o ../global/avance_param.o ../global/base.o ../global/block_io.o ../global/complex.o ../global/conv.o ../global/csvd.o ../global/dbl_list.o ../global/fblp.o ../global/ft.o ../global/gauss_jordan.o ../global/help.o ../global/list.o ../global/lin_pred.o ../global/lp.o ../global/mem.o ../global/nonlinear_model.o ../global/par.o ../global/parse.o ../global/poly_roots.o ../global/random.o ../global/ref.o ../global/sorts.o ../global/svd.o ../global/utility.o ../global/linpack/caxpy.o ../global/linpack/cdotc.o ../global/linpack/cscal.o ../global/linpack/csrot.o ../global/linpack/cswap.o ../global/linpack/scnrm2.o ../global/linpack/srotg.o ../global/linpack/r_cnjg.o ../global/linpack/r_imag.o ../global/linpack/r_sign.o ../global/linpack/c_abs.o ../global/linpack/c_div.o ../global/linpack/csvdc.o ../process/arrange.o ../process/avance.o ../process/baseline.o ../process/command.o ../process/complex.o ../process/convolve.o ../process/fft.o ../process/lp_extend.o ../process/lp_first.o ../process/lp_fit.o ../process/lp_last.o ../process/maxent.o ../process/opus.o ../process/phase.o ../process/weight.o -lm cd extract; /usr/pkg/bin/bmake /usr/pkg/bin/bmake local_objects cc -c -O block.c cc -c -O extract.c cd ../global; /usr/pkg/bin/bmake extract_objects cc -o extract block.o extract.o ../global/block_io.o ../global/help.o ../global/par.o ../global/parse.o ../global/ref.o ../global/utility.o cd project; /usr/pkg/bin/bmake /usr/pkg/bin/bmake local_objects cc -c -O block.c cc -c -O project.c project.c: In function 'print_project_info': project.c:302:5: warning: implicit declaration of function 'print_integer_array' [-Wimplicit-function-declaration] print_integer_array(ndim_proj, dim_proj); ^ cd ../global; /usr/pkg/bin/bmake project_objects cc -o project block.o project.o ../global/block_io.o ../global/help.o ../global/par.o ../global/parse.o ../global/ref.o ../global/utility.o cd unblock; /usr/pkg/bin/bmake /usr/pkg/bin/bmake local_objects cc -c -O block.c cc -c -O unblock.c cd ../global; /usr/pkg/bin/bmake unblock_objects cc -o unblock block.o unblock.o ../global/block_io.o ../global/help.o ../global/par.o ../global/parse.o ../global/ref.o ../global/utility.o cd contours; /usr/pkg/bin/bmake /usr/pkg/bin/bmake local_objects cc -c -O block.c cc -c -O contours.c cd ../global; /usr/pkg/bin/bmake contours_objects cc -c -O -o contour.o contour.c cc -o contours block.o contours.o ../global/block_io.o ../global/contour.o ../global/help.o ../global/par.o ../global/parse.o ../global/ref.o ../global/utility.o cd combine; /usr/pkg/bin/bmake /usr/pkg/bin/bmake local_objects cc -c -O block.c cc -c -O combine.c cc -c -O gradient.c cc -c -O simple.c cd ../global; /usr/pkg/bin/bmake combine_objects cc -o combine block.o combine.o gradient.o simple.o ../global/block_io.o ../global/help.o ../global/par.o ../global/parse.o ../global/ref.o ../global/utility.o cd deflate; /usr/pkg/bin/bmake /usr/pkg/bin/bmake local_objects cc -c -O block.c cc -c -O deflate.c cd ../global; /usr/pkg/bin/bmake deflate_objects cc -o deflate block.o deflate.o ../global/block_io.o ../global/help.o ../global/par.o ../global/parse.o ../global/ref.o ../global/utility.o cd reflate; /usr/pkg/bin/bmake /usr/pkg/bin/bmake local_objects cc -c -O block.c cc -c -O reflate.c cd ../global; /usr/pkg/bin/bmake reflate_objects cc -o reflate block.o reflate.o ../global/block_io.o ../global/help.o ../global/par.o ../global/parse.o ../global/ref.o ../global/utility.o cd utility; /usr/pkg/bin/bmake cc -c -O bin2asc.c cc -o bin2asc bin2asc.o cc -c -O int2float.c cc -o int2float int2float.o cc -c -O float2int.c cc -o float2int float2int.o cc -c -O look_at.c cc -o look_at look_at.o cc -c -O look_byte.c cc -o look_byte look_byte.o cc -c -O look_for.c cc -o look_for look_for.o cc -c -O swap.c cc -o swap swap.o cc -c -O mat2par.c cc -o mat2par mat2par.o cc -c -O par2mat.c In file included from par2mat.c:1:0: par2mat.c: In function 'main': macros.h:327:23: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (*Ptr2 && isspace(*Ptr2)) Ptr2++; \ ^ par2mat.c:43:2: note: in expansion of macro 'STRIP_LEADING_SPACE' STRIP_LEADING_SPACE(line); ^ cc -o par2mat par2mat.o cd connect; /usr/pkg/bin/bmake /usr/pkg/bin/bmake local_objects cc -c -O atom.c atom.c: In function 'find_atom_type': atom.c:10:41: warning: implicit declaration of function 'isdigit' [-Wimplicit-function-declaration] for (n = 0; (n < strlen(string)) && isdigit(string[n]); n++) ^ cc -c -O crosspeak.c crosspeak.c: In function 'read_crosspeak_file': crosspeak.c:182:9: warning: implicit declaration of function 'empty_string' [-Wimplicit-function-declaration] && !empty_string(line) ; ncrosspeaks++) ^ cc -c -O match.c cc -c -O output.c cc -c -O script.c cc -c -O shift.c shift.c: In function 'read_shift_file': shift.c:111:59: warning: implicit declaration of function 'empty_string' [-Wimplicit-function-declaration] for (nshifts = 0; fgets(line, LONG_LINE_SIZE, fp) && !empty_string(line) ; ^ cc -c -O table.c cc -c -O connect.c cd ../global; /usr/pkg/bin/bmake connect_objects cc -o connect atom.o crosspeak.o match.o output.o script.o shift.o table.o connect.o ../global/help.o ../global/par.o ../global/parse.o ../global/ref.o ../global/utility.o cd slides; /usr/pkg/bin/bmake /usr/pkg/bin/bmake local_objects cc -c -O ps_func.c cc -c -O slides.c slides.c: In function 'have_no_text': slides.c:195:7: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] if (!isspace(text[i])) ^ cd ../global; /usr/pkg/bin/bmake slides_objects cc -c -O -o color.o color.c cc -c -O -o date.o date.c cc -c -O -o output.o output.c cc -c -O -o ps.o ps.c cc -o slides ps_func.o slides.o ../global/color.o ../global/date.o ../global/help.o ../global/list.o ../global/output.o ../global/par.o ../global/parse.o ../global/ps.o ../global/ref.o ../global/utility.o cd components; /usr/pkg/bin/bmake /usr/pkg/bin/bmake local_objects cc -c -O block.c cc -c -O components.c In file included from components.h:6:0, from components.c:1: components.c: In function 'input_list_parse': macros.h:327:23: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (*Ptr2 && isspace(*Ptr2)) Ptr2++; \ ^ components.c:257:2: note: in expansion of macro 'STRIP_LEADING_SPACE' STRIP_LEADING_SPACE(line); ^ cd ../global; /usr/pkg/bin/bmake components_objects cc -c -O -o principal.o principal.c cc -o components -O block.o components.o ../global/block_io.o ../global/help.o ../global/par.o ../global/parse.o ../global/principal.o ../global/ref.o ../global/sorts.o ../global/utility.o -lm cd azara; /usr/pkg/bin/bmake /usr/pkg/bin/bmake local_objects cc -c -O azara.c cd ../global; /usr/pkg/bin/bmake azara_objects cc -o azara azara.o ../global/help.o cd plot2; /usr/pkg/bin/bmake /usr/pkg/bin/bmake local_plot2_objects cc -DUSE_XPM -c -O plot2.c plot2.c: In function 'quit_callback': plot2.c:60:6: warning: implicit declaration of function 'update_object_params' [-Wimplicit-function-declaration] update_object_params(); ^ plot2.c:64:6: warning: implicit declaration of function 'update_property_params' [-Wimplicit-function-declaration] update_property_params(); ^ cc -DUSE_XPM -c -O baseline_popup.c cc -DUSE_XPM -c -O data_popup.c data_popup.c: In function 'remove_data_set': data_popup.c:40:5: warning: implicit declaration of function 'remove_rowcol_set' [-Wimplicit-function-declaration] remove_rowcol_set(data_set); ^ cc -DUSE_XPM -c -O display_popup.c cc -DUSE_XPM -c -O extract_popup.c cc -DUSE_XPM -c -O fit_popup.c cc -DUSE_XPM -c -O fold_popup.c cc -DUSE_XPM -c -O levels_popup.c In file included from widget.h:76:0, from levels_popup.h:4, from levels_popup.c:1: levels_popup.c: In function 'levels_apply': levels_popup.c:87:18: warning: implicit declaration of function 'levels_apply_func' [-Wimplicit-function-declaration] CHECK_STATUS(levels_apply_func(nlevels, levels, error_msg)); ^ macros.h:371:12: note: in definition of macro 'CHECK_STATUS' { if ((status) == ERROR) return ERROR; } ^ levels_popup.c: In function 'action_command': levels_popup.c:111:18: warning: implicit declaration of function 'levels_action_func' [-Wimplicit-function-declaration] CHECK_STATUS(levels_action_func(modify_type, error_msg)); ^ macros.h:371:12: note: in definition of macro 'CHECK_STATUS' { if ((status) == ERROR) return ERROR; } ^ levels_popup.c: In function 'action_callback': levels_popup.c:127:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] if (action_command((int) data, error_msg) == ERROR) ^ cc -DUSE_XPM -c -O object_popup.c object_popup.c: In function 'object_callback': object_popup.c:96:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] int object = (int) data; ^ object_popup.c: In function 'create_object_popup': object_popup.c:212:25: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] object_items[i].data = (Generic_ptr) i; ^ cc -DUSE_XPM -c -O output_popup.c In file included from widget.h:76:0, from output_popup.h:4, from output_popup.c:1: output_popup.c: In function 'output_xpm': output_popup.c:171:15: warning: implicit declaration of function 'do_display_dump' [-Wimplicit-function-declaration] CHECK_STATUS(do_display_dump(output_file, error_msg)); ^ macros.h:371:12: note: in definition of macro 'CHECK_STATUS' { if ((status) == ERROR) return ERROR; } ^ output_popup.c:175:15: warning: implicit declaration of function 'do_slice_dump' [-Wimplicit-function-declaration] CHECK_STATUS(do_slice_dump(output_file, error_msg)); ^ macros.h:371:12: note: in definition of macro 'CHECK_STATUS' { if ((status) == ERROR) return ERROR; } ^ cc -DUSE_XPM -c -O peak_popup.c In file included from widget.h:76:0, from peak_popup.h:4, from peak_popup.c:1: peak_popup.c: In function 'add_peak_dialog': macros.h:327:23: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (*Ptr2 && isspace(*Ptr2)) Ptr2++; \ ^ peak_popup.c:127:6: note: in expansion of macro 'STRIP_LEADING_SPACE' STRIP_LEADING_SPACE(set); ^ cc -DUSE_XPM -c -O peaks_popup.c In file included from widget.h:76:0, from peaks_popup.h:4, from peaks_popup.c:1: peaks_popup.c: In function 'stretch_peaks': peaks_popup.c:204:18: warning: implicit declaration of function 'stretch_peak_func' [-Wimplicit-function-declaration] CHECK_STATUS(stretch_peak_func(ref_type, x_range, y_range, error_msg)); ^ macros.h:371:12: note: in definition of macro 'CHECK_STATUS' { if ((status) == ERROR) return ERROR; } ^ cc -DUSE_XPM -c -O phase_popup.c cc -DUSE_XPM -c -O prop_popup.c prop_popup.c: In function 'object_callback': prop_popup.c:106:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] int object = (int) data; ^ prop_popup.c: In function 'create_property_popup': prop_popup.c:294:25: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] object_items[i].data = (Generic_ptr) i; ^ cc -DUSE_XPM -c -O region_popup.c cc -DUSE_XPM -c -O rowcol_popup.c rowcol_popup.c: In function 'create_rowcol_popup': rowcol_popup.c:535:5: warning: implicit declaration of function 'set_reference_items' [-Wimplicit-function-declaration] set_reference_items((Box_item *) reference_items, reference_boxes); ^ cc -DUSE_XPM -c -O save_popup.c cc -DUSE_XPM -c -O slice_popup.c slice_popup.c: In function 'button_press': slice_popup.c:322:13: warning: implicit declaration of function 'rowcol_point_stats' [-Wimplicit-function-declaration] (void) rowcol_point_stats(&print_funcs, size, point, error_msg); ^ cc -DUSE_XPM -c -O track_popup.c cc -DUSE_XPM -c -O baseline.c cc -DUSE_XPM -c -O baseline_func.c In file included from slice.h:4:0, from baseline_func.h:4, from baseline_func.c:1: baseline_func.c: In function 'get_baseline_file': macros.h:327:23: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (*Ptr2 && isspace(*Ptr2)) Ptr2++; \ ^ baseline_func.c:36:5: note: in expansion of macro 'STRIP_LEADING_SPACE' STRIP_LEADING_SPACE(baseline_file); ^ cc -DUSE_XPM -c -O block.c cc -DUSE_XPM -c -O data.c cc -DUSE_XPM -c -O data_func.c cc -DUSE_XPM -c -O draw.c cc -DUSE_XPM -c -O extract.c cc -DUSE_XPM -c -O extract_func.c In file included from extract_func.h:4:0, from extract_func.c:1: extract_func.c: In function 'extract_load_func': macros.h:327:23: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (*Ptr2 && isspace(*Ptr2)) Ptr2++; \ ^ extract_func.c:50:5: note: in expansion of macro 'STRIP_LEADING_SPACE' STRIP_LEADING_SPACE(plane_name); ^ cc -DUSE_XPM -c -O fit.c cc -DUSE_XPM -c -O fit_func.c cc -DUSE_XPM -c -O fold.c cc -DUSE_XPM -c -O fold_func.c cc -DUSE_XPM -c -O levels.c cc -DUSE_XPM -c -O levels_func.c cc -DUSE_XPM -c -O object.c cc -DUSE_XPM -c -O object_func.c cc -DUSE_XPM -c -O output_func.c In file included from output_func.h:4:0, from output_func.c:1: output_func.c: In function 'output_save_func': macros.h:327:23: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (*Ptr2 && isspace(*Ptr2)) Ptr2++; \ ^ output_func.c:106:5: note: in expansion of macro 'STRIP_LEADING_SPACE' STRIP_LEADING_SPACE(output_file); ^ cc -DUSE_XPM -c -O param.c In file included from param_value.h:4:0, from param.c:2: param.c: In function 'save_parameters': macros.h:327:23: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (*Ptr2 && isspace(*Ptr2)) Ptr2++; \ ^ param.c:51:7: note: in expansion of macro 'STRIP_LEADING_SPACE' STRIP_LEADING_SPACE(params->value); ^ cc -DUSE_XPM -c -O peak.c In file included from peak.h:4:0, from peak.c:1: peak.c: In function 'peak_name_exists': macros.h:327:23: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (*Ptr2 && isspace(*Ptr2)) Ptr2++; \ ^ peak.c:272:5: note: in expansion of macro 'STRIP_LEADING_SPACE' STRIP_LEADING_SPACE(name); ^ cc -DUSE_XPM -c -O peaks_func.c cc -DUSE_XPM -c -O phase.c cc -DUSE_XPM -c -O phase_func.c cc -DUSE_XPM -c -O position.c In file included from position.h:4:0, from position.c:1: position.c: In function 'initialize_position': macros.h:327:23: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (*Ptr2 && isspace(*Ptr2)) Ptr2++; \ ^ position.c:71:5: note: in expansion of macro 'STRIP_LEADING_SPACE' STRIP_LEADING_SPACE(name); ^ cc -DUSE_XPM -c -O prop_func.c cc -DUSE_XPM -c -O region.c cc -DUSE_XPM -c -O region_func.c cc -DUSE_XPM -c -O rowcol.c cc -DUSE_XPM -c -O rowcol_func.c cc -DUSE_XPM -c -O save.c cc -DUSE_XPM -c -O save_func.c cc -DUSE_XPM -c -O script.c script.c: In function 'sleep_command_func': script.c:71:2: warning: implicit declaration of function 'sleep' [-Wimplicit-function-declaration] sleep(s); ^ In file included from script.h:4:0, from script.c:1: script.c: In function 'script_key_value': macros.h:327:23: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (*Ptr2 && isspace(*Ptr2)) Ptr2++; \ ^ script.c:361:5: note: in expansion of macro 'STRIP_LEADING_SPACE' STRIP_LEADING_SPACE(value); ^ cc -DUSE_XPM -c -O slice.c cd ../global; /usr/pkg/bin/bmake plot2_objects cc -c -O -o callback.o callback.c cc -c -O -o event_handle.o event_handle.c cc -c -O -o display.o display.c cc -c -O -o gamma.o gamma.c cc -c -O -o hpgl.o hpgl.c cc -c -O -o info_popup.o info_popup.c cc -c -O -o line_fit.o line_fit.c cc -c -O -o ref_popup.o ref_popup.c cc -c -O -o stack.o stack.c cc -c -O -o ticks.o ticks.c cc -c -O -o timer.o timer.c cc -c -O -o window.o window.c cc -o plot2 -O plot2.o baseline_popup.o data_popup.o display_popup.o extract_popup.o fit_popup.o fold_popup.o levels_popup.o object_popup.o output_popup.o peak_popup.o peaks_popup.o phase_popup.o prop_popup.o region_popup.o rowcol_popup.o save_popup.o slice_popup.o track_popup.o baseline.o baseline_func.o block.o data.o data_func.o draw.o extract.o extract_func.o fit.o fit_func.o fold.o fold_func.o levels.o levels_func.o object.o object_func.o output_func.o param.o peak.o peaks_func.o phase.o phase_func.o position.o prop_func.o region.o region_func.o rowcol.o rowcol_func.o save.o save_func.o script.o slice.o ../global/callback.o ../global/display.o ../global/event_handle.o ../global/info_popup.o ../global/ref_popup.o ../global/timer.o ../global/window.o ../global/base.o ../global/block_io.o ../global/color.o ../global/contour.o ../global/date.o ../global/ft.o ../global/gamma.o ../global/gauss_jordan.o ../global/help.o ../global/hpgl.o ../global/line_fit.o ../global/list.o ../global/nonlinear_model.o ../global/output.o ../global/par.o ../global/parse.o ../global/ps.o ../global/ref.o ../global/stack.o ../global/svd.o ../global/ticks.o ../global/utility.o -lm -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lXm -lXt -lX11 -lXpm /usr/pkg/bin/bmake local_plot2_nog_objects cc -DUSE_XPM -c -O plot2_nog.c cc -DUSE_XPM -c -O command.c cd ../global; /usr/pkg/bin/bmake plot2_nog_objects cc -o plot2_nog -O plot2_nog.o command.o baseline.o baseline_func.o block.o data.o data_func.o draw.o extract.o extract_func.o fit.o fit_func.o fold.o fold_func.o levels.o levels_func.o object.o object_func.o output_func.o param.o peak.o peaks_func.o phase.o phase_func.o position.o prop_func.o region.o region_func.o rowcol.o rowcol_func.o save.o save_func.o script.o slice.o ../global/base.o ../global/block_io.o ../global/color.o ../global/contour.o ../global/date.o ../global/ft.o ../global/gamma.o ../global/gauss_jordan.o ../global/help.o ../global/hpgl.o ../global/line_fit.o ../global/list.o ../global/nonlinear_model.o ../global/output.o ../global/par.o ../global/parse.o ../global/ps.o ../global/ref.o ../global/stack.o ../global/svd.o ../global/ticks.o ../global/utility.o -lm cd plot1; /usr/pkg/bin/bmake /usr/pkg/bin/bmake local_objects cc -c -O plot1.c cc -c -O arith.c cc -c -O arrange.c cc -c -O assign.c cc -c -O avance.c cc -c -O baseline.c baseline.c:357:8: warning: return type defaults to 'int' [-Wimplicit-int] static do_subtract_base(String file, Bool have_range, int f, int l, ^ cc -c -O block.c cc -c -O button.c cc -c -O button_popup.c cc -c -O complex.c cc -c -O convolve.c cc -c -O data.c cc -c -O data_popup.c cc -c -O display_popup.c cc -c -O draw.c draw.c: In function 'do_drawing': draw.c:132:2: warning: implicit declaration of function 'draw_minor_ticks' [-Wimplicit-function-declaration] draw_minor_ticks(global->minor_ticks, done, lower, upper, draw_funcs); ^ draw.c:133:2: warning: implicit declaration of function 'draw_major_ticks' [-Wimplicit-function-declaration] draw_major_ticks(global->major_ticks, done, lower, upper, draw_funcs); ^ cc -c -O fft.c cc -c -O input.c cc -c -O lp_first.c cc -c -O lp_last.c cc -c -O maths.c cc -c -O object.c object.c: In function 'init_color': object.c:152:9: warning: implicit declaration of function 'setup_command' [-Wimplicit-function-declaration] if (setup_command(nstore, store, "color", do_color, error_msg) == ERROR) ^ cc -c -O object_popup.c object_popup.c: In function 'object_callback': object_popup.c:202:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] int object = (int) data; ^ object_popup.c: In function 'create_object_popup': object_popup.c:243:25: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] object_items[i].data = (Generic_ptr) i; ^ cc -c -O output_popup.c In file included from widget.h:76:0, from output_popup.h:4, from output_popup.c:1: output_popup.c: In function 'save_callback': macros.h:327:23: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (*Ptr2 && isspace(*Ptr2)) Ptr2++; \ ^ output_popup.c:197:5: note: in expansion of macro 'STRIP_LEADING_SPACE' STRIP_LEADING_SPACE(output_file); ^ output_popup.c:204:9: warning: implicit declaration of function 'run_script' [-Wimplicit-function-declaration] if (run_script(0, error_msg) == ERROR) ^ cc -c -O param.c In file included from param_value.h:4:0, from param.c:2: param.c: In function 'save_parameters': macros.h:327:23: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (*Ptr2 && isspace(*Ptr2)) Ptr2++; \ ^ param.c:51:7: note: in expansion of macro 'STRIP_LEADING_SPACE' STRIP_LEADING_SPACE(params->value); ^ cc -c -O phase.c cc -c -O plots.c plots.c: In function 'init_plot_y': plots.c:30:9: warning: implicit declaration of function 'setup_command' [-Wimplicit-function-declaration] if (setup_command(nstore+1, store, "plot_y", do_plot_y, ^ cc -c -O prop_popup.c cc -c -O region.c cc -c -O region_popup.c region_popup.c: In function 'find_point_stats': region_popup.c:200:5: warning: implicit declaration of function 'print_point_stats' [-Wimplicit-function-declaration] print_point_stats(ref_type, desired_point, &print_funcs); ^ region_popup.c: In function 'find_region_stats': region_popup.c:221:5: warning: implicit declaration of function 'print_region_stats' [-Wimplicit-function-declaration] print_region_stats(ref_type, x, &print_funcs); ^ cc -c -O script.c cc -c -O slider.c cc -c -O slider_popup.c cc -c -O text.c cc -c -O text_popup.c cc -c -O weight.c cd ../global; /usr/pkg/bin/bmake plot1_objects cc -c -O -o parser.o parser.c parser.c: In function 'store_int_to_float': parser.c:769:5: warning: implicit declaration of function 'float_words' [-Wimplicit-function-declaration] float_words((float *) (store->data), store->ndata); ^ parser.c: In function 'store_float_to_int': parser.c:779:5: warning: implicit declaration of function 'int_words' [-Wimplicit-function-declaration] int_words((int *) (store->data), store->ndata); ^ cc -o plot1 plot1.o arith.o arrange.o assign.o avance.o baseline.o block.o button.o button_popup.o complex.o convolve.o data.o data_popup.o display_popup.o draw.o fft.o input.o lp_first.o lp_last.o maths.o object.o object_popup.o output_popup.o param.o phase.o plots.o prop_popup.o region.o region_popup.o script.o slider.o slider_popup.o text.o text_popup.o weight.o ../global/avance_param.o ../global/base.o ../global/block_io.o ../global/callback.o ../global/color.o ../global/complex.o ../global/conv.o ../global/date.o ../global/display.o ../global/event_handle.o ../global/ft.o ../global/help.o ../global/hpgl.o ../global/info_popup.o ../global/lin_pred.o ../global/list.o ../global/lp.o ../global/output.o ../global/par.o ../global/parse.o ../global/parser.o ../global/poly_roots.o ../global/ps.o ../global/ref.o ../global/ref_popup.o ../global/svd.o ../global/ticks.o ../global/utility.o ../global/window.o -lm -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lXm -lXt -lX11 cd viewer; /usr/pkg/bin/bmake /usr/pkg/bin/bmake local_objects cc -c -O contours.c cc -c -O viewer.c cc -o viewer -O contours.o viewer.o ../global/help.o -lm -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -lglut -lGLU -lGL -lXmu -lXi -lX11 -lXext -------------------------------------------------------------------------------- -- Phase: stage-install -------------------------------------------------------------------------------- => Bootstrap dependency digest>=20010302: found digest-20160304 ===> Installing for azara-2.7nb6 => Creating installation directories => Requiring users and groups for azara-2.7nb6 set -e; cd /construction/biology/azara/work/azara-2.7/bin; /usr/bin/install -c -s -o root -g wheel -m 755 azara bin2asc combine connect contours deflate extract float2int int2float look_at look_byte look_for mat2par par2mat peak_find peak_fit plot1 plot2 process project reflate slides swap unblock viewer /construction/biology/azara/work/.destdir/usr/pkg/bin => Automatic manual page handling -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- => Bootstrap dependency digest>=20010302: found digest-20160304 /usr/bin/awk -vPREFIX="/usr/pkg" -vREQD_FILES="" -vREQD_FILES_MODE="" -vCONF_FILES="" -vCONF_FILES_MODE="0644" -vCONF_FILES_PERMS=" " -vRCD_SCRIPTS="" -vRCD_SCRIPTS_DIR="/etc/rc.d" -vRCD_SCRIPTS_MODE="0755" -vRCD_SCRIPTS_EXAMPLEDIR="share/examples/rc.d" -vPKG_SHELL="" -vSPECIAL_PERMS="" -vOCAML_FINDLIB_DIRS="" -vLDCONFIG="" -vX11_TYPE="modular" -vFONTSDIR_X11="" -vFONTSDIR_TTF="" -vFONTSDIR_TYPE1="" -vPKG_SYSCONFDIR="/usr/pkg/etc" -f /xports/mk/pkgformat/pkgng/transform_plist.awk /construction/biology/azara/work/.PLIST > /construction/biology/azara/work/.PLIST.pkgng => Creating binary package /construction/biology/azara/work/.packages/azara-2.7nb6.txz if ! /usr/bin/env PKG_DBDIR=/var/db/pkg8 INSTALL_AS_USER=yes /usr/pkg/sbin/pkg-static create --metadata /construction/biology/azara/work/.pkgdb --plist /construction/biology/azara/work/.PLIST.pkgng --out-dir /construction/biology/azara/work/.packages --root-dir /construction/biology/azara/work/.destdir --verbose -f txz; then exitcode=$?; /bin/rm -f "/construction/biology/azara/work/.packages/azara-2.7nb6.txz"; exit $exitcode; fi file sizes/checksums [25]: . done packing files [25]: . done packing directories [0]: . done ===> Building binary package for azara-2.7nb6 => Creating binary package /packages/All/azara-2.7nb6.txz /bin/ln -f /construction/biology/azara/work/.packages/azara-2.7nb6.txz /packages/All/azara-2.7nb6.txz 2>/dev/null || /bin/cp -pf /construction/biology/azara/work/.packages/azara-2.7nb6.txz /packages/All/azara-2.7nb6.txz -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Monday, 5 DEC 2016 at 15:37:20 UTC Duration: 00:01:23